Add singularity_options to the native structure. #853
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…rs to specify additional options for Singularity such as --nv for nVIDIA GPU and --rocm for AMD GPU or --bind /etc/OpenCL for OpenCL (in combination with one of the prior).
|
Thanks for the update! Your commit however is not quite correct. It doesn't seem to be tied to your github account. |
|
Should be fixed now (GitHub is not aware of various institutional e-mail alias). |
johrstrom
approved these changes
Sep 13, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This allows containers launch specs to specify additional options for Singularity such as --nv for nVIDIA GPU and --rocm for AMD GPU or --bind /etc/OpenCL for OpenCL (in combination with one of the prior).
Example:
script:
native:
singularity_bindpath: /tmp,/home,/mnt,/run
singularity_bin: /usr/bin/singularity
singularity_container: "/opt/ood/images/nvidia-parabricks.sif"
singularity_options: "--nv"
Will allow Parabricks to run with nVIDIA GPU.